Os01g0102400

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Please cite: Lage Bu (2017) Gene: "Os01g0102400" in RiceWiki, available at http://wiki.ic4r.org/index.php?title=Os01g0102400&oldid=277745 (Last update: Mar 31, 2017). [See details]

The rice Os01g0102400 was reported as OsNF-YC9 in 2016 [1] by researchers from China.

Contents

Annotated Information

Gene Symbol

  • Os01g0102400 <=> OsNF-YC9

Function

  • Nuclear factor γ (NF-γ) is a ubiquitous transcription factor that regulates important physiological and developmental processes.[1]
  • In plants, the roles of NF-γ were identified in regulation of embryogenesis, flowering time, chloroplast biogenesis, seed germination and stress tolerance.[1] [2]

Expression

  • Expression profile analysis covering the whole life cycle revealed that transcripts of OsNF-γ differentially accumulated in a tissue-specific preferential or constitutive manner.[1]
  • Analysis of expression correlation and Gene Ontology annotation suggested that OsNF-Y genes were co-expressed with genes that participated in stress, accumulation of seed storage reserves, and plant development.
  • Co-expression analysis also revealed that OsNF-Y genes might interact with each other, suggesting that NF-γ subunits formed complexes that take part in transcriptional regulation.[1]

Evolution

  • NF-γ is a heterotrimeric complex composed of three subunits: NF-γA (CBF-B/HAP2), NF-γB (CBF-A/HAP3), and NF-γC

(CBF-C/HAP5).

  • NF-γ complexes are CCAAT-specific transcription factors that bind to CCAAT sites in DNA to control the expression of target genes[1] .

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Labs working on this gene

  • College of Life Science and Technology, Huazhong Agricultural University, Wuhan, 430070, China
  • College of Plant Science and Technology, Huazhong Agricultural University, Wuhan, 430070, China

References

  1. 1.0 1.1 1.2 1.3 1.4 1.5 Yang, W., Lu, Z., Xiong, Y., & Yao, J. (2016). Genome-wide identification and co-expression network analysis of the OsNF-γ gene family in rice. The Crop Journal.
  2. Laloum T, De Mita S, Gamas P, Baudin M, Niebel A. CCAAT-box binding transcription factors in plants: Y so many? Trends Plant Sci. 2013 Mar;18(3):157-66. doi: 10.1016/j.tplants.2012.07.004. Epub 2012 Aug 30. Review. Erratum in: Trends Plant Sci. 2013 Oct;18(10):594-5. PubMed PMID: 22939172.

Structured Information

Gene Locus Os01g0102400
Organism Oryza sativa japonica group
Length 1729 bp
Chromosome Chromosome 01
Location Chromosome 01:139826...141555
Genome Browser

IC4R-Expression

IC4R-Homolog

Please cite: Lage Bu (2017) Gene: "Os01g0102400" in RiceWiki, available at http://wiki.ic4r.org/index.php?title=Os01g0102400&oldid=277745 (Last update: Mar 31, 2017).
ContributorContribution Score*Edit Count#Summed Edit QuantityΛAveraged Edit QualityLatest Edit TimeEdit Details
Lage Bu2.0111201112017-03-31 12:00:10[show]
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